PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16189.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 587aa    MW: 66803.4 Da    PI: 6.4063
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16189.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10436484348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+eE  +lv++v q G g+W+ I r +     +Rt  ++k++w+++l
        PK16189.1 436 SWTPEEVVKLVEGVSQCGVGRWTEIKRLLFsssSHRTSVDLKDKWRNLL 484
                      5**********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-13427488IPR009057Homeodomain-like
PROSITE profilePS5129418.091429488IPR017930Myb domain
SMARTSM007176.1E-11433486IPR001005SANT/Myb domain
PfamPF002495.4E-8436484IPR001005SANT/Myb domain
CDDcd116609.18E-19437485No hitNo description
SuperFamilySSF466896.68E-16437490IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MFSCKPYEVD SDMPIFADEP VGLEHFLVEP LRKEDWVGDL LDLDAFQIEK CFNMEDISGT  60
FDYDQNQIKL DADTVHPMSP KGSEKNSELS SDKFQDVNTK VHEEYHIDTT LTDKACNFDY  120
GNCKEMGTGG VENQFQGFHR SGSGNKMADL SSTNTPVLEY GNNHHSSLLD QGRAKELHDT  180
YNMSGREPFM EKGWPKKDNL YDFSDYAELD SSMNLVKVEE TSNVNEGETT FSSLVVYSGS  240
VTGHVTRLLH DERSSENQQM KRKRVDGCES LKTSASAVKV EMCSLDEGDQ AGLLVSPKRA  300
RKPPKRYIEE SLNYDSRSHH RKCGIGRKLK DRILHDGYQK YKWHQKEFHA EVFEDDSFNG  360
GCIQVPFGLP MEKEHSKKNK YILGSESTKD NGLVDQNEKH DTERYSVDSQ DEISEDECVL  420
RSSTQKANTR RKRHISWTPE EVVKLVEGVS QCGVGRWTEI KRLLFSSSSH RTSVDLKDKW  480
RNLLRASCTQ LHIKEKVEQS RKQASSNYVP DSILCRVREL AVVYPYPREN RSKDSCTVPA  540
VSSFSTGSSN ALVPLSTVAK EQRKSARVVL EQHLQHTSRP HGYTMLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109483.10.0Telomere repeat-binding protein 4
TrEMBLW9SRL60.0W9SRL6_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-24TRF-like 6